Train, convert and predict a model

Train and deploy a model usually involves the three following steps:

• train a pipeline with scikit-learn,

• convert it into ONNX with sklearn-onnx,

• predict with onnxruntime.

Train a model

A very basic example using random forest and the iris dataset.

import skl2onnx
import onnx
import sklearn
from sklearn.linear_model import LogisticRegression
import numpy
import onnxruntime as rt
from skl2onnx.common.data_types import FloatTensorType
from skl2onnx import convert_sklearn
from sklearn.datasets import load_iris
from sklearn.model_selection import train_test_split
from sklearn.ensemble import RandomForestClassifier

iris = load_iris()
X, y = iris.data, iris.target
X_train, X_test, y_train, y_test = train_test_split(X, y)
clr = RandomForestClassifier()
clr.fit(X_train, y_train)
print(clr)

RandomForestClassifier()

Convert a model into ONNX

initial_type = [("float_input", FloatTensorType([None, 4]))]
onx = convert_sklearn(clr, initial_types=initial_type, target_opset=12)

with open("rf_iris.onnx", "wb") as f:
    f.write(onx.SerializeToString())

Compute the prediction with ONNX Runtime

sess = rt.InferenceSession("rf_iris.onnx", providers=["CPUExecutionProvider"])
input_name = sess.get_inputs()[0].name
label_name = sess.get_outputs()[0].name
pred_onx = sess.run([label_name], {input_name: X_test.astype(numpy.float32)})[0]
print(pred_onx)

[0 0 0 0 1 2 1 0 0 0 1 1 1 0 1 0 1 1 2 0 1 2 2 1 2 2 2 1 1 0 0 0 2 2 0 2 2
 0]

Full example with a logistic regression

clr = LogisticRegression()
clr.fit(X_train, y_train)
initial_type = [("float_input", FloatTensorType([None, X_train.shape[1]]))]
onx = convert_sklearn(clr, initial_types=initial_type, target_opset=12)
with open("logreg_iris.onnx", "wb") as f:
    f.write(onx.SerializeToString())

sess = rt.InferenceSession("logreg_iris.onnx", providers=["CPUExecutionProvider"])
input_name = sess.get_inputs()[0].name
label_name = sess.get_outputs()[0].name
pred_onx = sess.run([label_name], {input_name: X_test.astype(numpy.float32)})[0]
print(pred_onx)

[0 0 0 0 1 2 1 0 0 0 1 1 1 0 1 0 1 1 2 0 1 2 2 1 2 2 2 1 1 0 0 0 2 2 0 2 2
 0]

Versions used for this example

print("numpy:", numpy.__version__)
print("scikit-learn:", sklearn.__version__)
print("onnx: ", onnx.__version__)
print("onnxruntime: ", rt.__version__)
print("skl2onnx: ", skl2onnx.__version__)

numpy: 1.23.5
scikit-learn: 1.4.dev0
onnx:  1.15.0
onnxruntime:  1.16.0+cu118
skl2onnx:  1.16.0